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Data Processing Steps:
Formats for Common Programs:
NCBI/EBI Submission Tools:
RDP's mission and funding:
Part of RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.
About the RDP Pipeline
RDP's Pipeline aims to simplify the processing of large rRNA sequence libraries (including single-strand and paired-end reads) obtained through high-throughput sequencing technology. This site offers tools for assembly, quality filtering, taxonomy based analysis and taxonomy independent analysis tools, and tools to convert the data to formats suitable for common ecological and statistical packages.
For large datasets, please use our command line tools, available through RDPTools GitHub.
If you use RDPipeline, please cite our most recent article.
Problems with the pipeline?
10/07/2015 Xander assembler article is published.
10/07/2015 Warcup Fungal ITS article is accepted!
07/08/2015 *** Pyro Job Submission up ***
07/08/2015 Pyro Job Submission Down
05/28/2015 RDP Staff attending ASM Meeting in New Orleans
05/26/2015 RDP Release 11.4 available
03/27/2015 FrameBot new option Add de novo to references available
02/23/2015 WARNING -- RDP unavailable Sat., March 7th
02/16/2015 Introducing Xander assembler
10/21/2014 Classifier provides gene copy number adjustment