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Data Processing Steps:
Formats for Common Programs:
NCBI/EBI Submission Tools:
RDP's mission and funding:
Part of RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.
About the RDP Pipeline
RDP's Pipeline aims to simplify the processing of large rRNA sequence libraries (including single-strand and paired-end reads) obtained through high-throughput sequencing technology. This site offers tools for assembly, quality filtering, taxonomy based analysis and taxonomy independent analysis tools, and tools to convert the data to formats suitable for common ecological and statistical packages. For extremely large datasets, please use our command line tools, available through GitHub.
If you use RDPipeline, please cite our most recent article.
Problems with the pipeline?
03/07/2014 RDP Release 11.2
11/08/2013 RDPipeline Bug Fix
11/08/2013 Fungene Repository Release 7.3
10/16/2013 RDP 11 and RDPipeline are now live
10/16/2013 RDP 11 Major Release Tonight
10/09/2013 FunGene article published
10/09/2013 RDP FrameBot article published
10/01/2013 RDP Staff and Poster
09/25/2013 Campus internet interruptions
08/16/2013 Power outage alert